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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
Assay category
112
DNA binding
Target of assay
57
control
55
histone
55
histone modification
33
broad histone mark
22
narrow histone mark
Date released
48
August, 2017
23
May, 2020
23
November, 2017
October, 2019
8
October, 2017
7
August, 2021
3
February, 2021
Available data
2855
bam
2684
bigWig
bed narrowPeak
1429
tsv
1099
fastq
910
bigBed narrowPeak
342
tagAlign
295
bed broadPeak
258
bigBed broadPeak
246
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
15
bedpe bed3+
14
hic
12
bed bed3
8
csv
7
bed bedgraph
3
tar
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
111
Homo sapiens
Biosample type
84
tissue
21
in vitro differentiated cells
6
cell line
1
primary cell
Organ
47
liver
28
brain
21
connective tissue
7
adipose tissue
5
pancreas
2
artery
2
blood vessel
epithelium
2
heart
2
musculature of body
2
vasculature
Project
112
AMP
Genome assembly (visualization)
4
hg19
Lab
112
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
month_released!
June, 2018
October, 2019
organ_slims!
epithelium
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
tissue
liver
43
brain
8
cingulate gyrus
7
subcutaneous abdominal adipose tissue
7
layer of hippocampus
4
+ See 6 more…
in vitro differentiated cells
adipocyte
14
neural progenitor cell
7
cell line
HepG2
3
smooth muscle cell of the coronary artery
2
iPSC derived cell line
1
primary cell
skeletal muscle myoblast
1
See all biosamples
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