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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
53
total RNA-seq
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RNA microarray
1
RRBS
1
small RNA-seq
Assay category
150
DNA accessibility
118
Transcription
1
3D chromatin structure
1
DNA methylation
Date released
130
August, 2021
68
June, 2019
47
September, 2023
14
May, 2023
8
February, 2021
4
July, 2019
3
October, 2019
2
December, 2019
2
March, 2020
Available data
133
bed narrowPeak
74
bam
74
bigWig
69
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
16
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
278
Homo sapiens
Biosample type
271
tissue
7
cell line
Organ
676
pancreas
530
connective tissue
418
adipose tissue
epithelium
302
kidney
259
heart
239
liver
158
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
231
AMP
47
KPMP
Genome assembly (visualization)
148
GRCh38
75
hg19
Lab
142
Katalin Susztak, Upenn
87
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
6
audit script error
5
inconsistent ontology term
month_released!
June, 2018
organ_slims!
epithelium
lab.title!
Kyle Gaulton, UCSD
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
278 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
snDrop-seq
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RNA microarray
RRBS
small RNA-seq
tissue
kidney
75
13
64
49
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 9 more…
cell line
HEK293T
2
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
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