Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
Assay category
94
DNA binding
Target of assay
828
histone modification
827
histone
453
transcription factor
423
narrow histone mark
403
broad histone mark
313
control
94
RNA binding protein
89
recombinant protein
30
chromatin remodeller
4
other context
4
other post-translational modification
2
nucleotide modification
Date released
30
November, 2017
21
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
April, 2019
4
May, 2019
2
December, 2017
2
December, 2018
2
June, 2019
1
August, 2021
Available data
95
bam
93
bigWig
92
bed narrowPeak
86
bigBed narrowPeak
85
fastq
bed broadPeak
7
bigBed broadPeak
2
bed bed3+
1
tar
Organism
94
Homo sapiens
Biosample type
60
cell line
23
tissue
9
in vitro differentiated cells
2
primary cell
Organ
54
liver
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
epithelium
6
heart
5
adipose tissue
3
blood vessel
3
kidney
3
vasculature
1
artery
1
eye
Project
94
AMP
Genome assembly (visualization)
85
hg19
82
GRCh38
Lab
88
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
month_released!
June, 2018
organ_slims!
epithelium
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
94 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
50
GM12878
10
tissue
body of pancreas
5
heart left ventricle
3
omental fat pad
3
islet of Langerhans
2
subcutaneous adipose tissue
2
+ See 8 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
See all biosamples
Download