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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
21
snATAC-seq
3
ChIP-seq
1
FAIRE-seq
Assay category
52
Transcription
22
DNA accessibility
3
DNA binding
Target of assay
3
transcription factor
1
RNA binding protein
Date released
54
May, 2022
19
September, 2020
3
November, 2017
1
October, 2019
Available data
2701
bam
2544
bigWig
1603
bed narrowPeak
1181
tsv
951
bigBed narrowPeak
885
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
244
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
77
Homo sapiens
Biosample type
74
primary cell
3
cell line
Organ
81
epithelium
pancreas
3
liver
1
blood vessel
1
vasculature
1
vein
Project
73
HPAP
4
AMP
Genome assembly (visualization)
4
hg19
Lab
73
Klaus Kaestner, Upenn
4
AMP-T2D consortium
month_released!
June, 2018
organ_slims!
pancreas
BIOSAMPLE
ASSAY
77 results
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single cell RNA-seq
snATAC-seq
ChIP-seq
FAIRE-seq
primary cell
Langerhans cell
52
21
endothelial cell of umbilical vein
1
cell line
HepG2
3
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