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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
156
ChIP-seq
93
single cell RNA-seq
86
total RNA-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
GRO-seq
1
small RNA-seq
Assay category
156
DNA binding
Target of assay
109
histone
109
histone modification
61
broad histone mark
48
narrow histone mark
27
control
20
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
21
May, 2019
13
December, 2017
9
February, 2018
6
February, 2021
5
June, 2019
5
October, 2019
Available data
128
bed narrowPeak
128
bigWig
115
bam
64
bigBed narrowPeak
22
fastq
6
tagAlign
3
bed bed3+
Organism
156
Homo sapiens
Biosample type
123
tissue
22
in vitro differentiated cells
6
cell line
5
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
156
AMP
Genome assembly (visualization)
128
GRCh38
89
hg19
Lab
116
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
8
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
June, 2018
BIOSAMPLE
ASSAY
156 results
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Clear Filters
ChIP-seq
tissue
left cardiac atrium
40
heart left ventricle
35
heart
14
heart right ventricle
13
right atrium auricular region
10
+ See 2 more…
in vitro differentiated cells
pancreatic endoderm
18
Hepatic endoderm
4
cell line
smooth muscle cell of the coronary artery
6
primary cell
cardiac fibroblast
5
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