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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
497
ATAC-seq
84
snATAC-seq
25
DNase-seq
5
FAIRE-seq
Assay category
1736
Transcription
1635
DNA binding
611
DNA accessibility
96
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
May, 2021
33
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
292
bed narrowPeak
189
bam
158
bigWig
102
fastq
64
xls
60
zippedFastqFolder
54
bigBed narrowPeak
22
bed bed3+
21
bed broadPeak
19
bigBed broadPeak
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
610
Homo sapiens
Biosample type
307
tissue
251
primary cell
38
in vitro differentiated cells
15
cell line
Organ
153
pancreas
93
epithelium
85
kidney
51
blood vessel
51
vasculature
47
artery
47
heart
28
connective tissue
28
eye
27
liver
12
bone element
12
limb
12
skeleton
10
lung
9
blood
9
bodily fluid
7
adipose tissue
7
brain
3
nerve
3
vein
2
musculature of body
2
spleen
1
pituitary gland
1
skin of body
Project
475
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
271
hg19
241
GRCh38
Lab
346
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
47
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
29
audit script error
26
inconsistent ontology term
1
inconsistent replicate
month_released!
June, 2019
May, 2021
BIOSAMPLE
ASSAY
611 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
75
6
1
islet of Langerhans
68
7
1
1
coronary artery
36
liver
20
2
retina
15
+ See 32 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 40 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
3
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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