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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
44
ATAC-seq
11
ChIP-seq
2
single cell RNA-seq
Assay category
57
Transcription
44
DNA accessibility
11
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
5
May, 2019
3
July, 2019
2
August, 2021
June, 2019
1
February, 2020
Available data
74
bam
62
bigWig
57
tsv
51
bed narrowPeak
6
tagAlign
3
bigBed narrowPeak
Organism
112
Homo sapiens
Biosample type
66
cell line
44
tissue
2
primary cell
Organ
940
pancreas
787
liver
665
connective tissue
498
epithelium
490
adipose tissue
356
heart
269
kidney
254
brain
228
vasculature
225
blood vessel
159
bone element
139
artery
limb
69
blood
69
bodily fluid
53
eye
48
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
Genome assembly (visualization)
105
GRCh38
70
hg19
Lab
112
AMP-T2D consortium
month_released!
June, 2019
assay_title!
RRBS
organ_slims!
limb
BIOSAMPLE
ASSAY
112 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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