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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1659
ChIP-seq
1059
total RNA-seq
506
ATAC-seq
359
single cell RNA-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
52
pCHi-C
33
Hi-C
22
DNase-seq
20
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
22
DNA accessibility
Date released
June, 2019
10
October, 2019
8
November, 2018
4
August, 2017
Available data
19
bam
19
bed narrowPeak
19
bigBed narrowPeak
19
bigWig
16
bed broadPeak
16
bigBed broadPeak
15
bed bed3+
10
fastq
Organism
22
Homo sapiens
Biosample type
14
tissue
6
primary cell
2
cell line
Organ
5
epithelium
4
blood vessel
4
limb
4
liver
4
pancreas
4
vasculature
connective tissue
3
kidney
2
artery
2
brain
2
nerve
2
vein
1
adipose tissue
1
spleen
Project
22
AMP
Genome assembly (visualization)
19
hg19
17
GRCh38
Lab
22
AMP-T2D consortium
month_released!
June, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
22 results
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DNase-seq
tissue
body of pancreas
2
brain
2
liver
2
right lobe of liver
2
tibial artery
2
+ See 3 more…
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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