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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1677
ChIP-seq
1402
total RNA-seq
428
ATAC-seq
293
single cell RNA-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
28
WGBS
26
Hi-C
20
DNase-seq
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
20
DNA accessibility
Date released
June, 2019
9
November, 2018
5
August, 2017
5
October, 2019
1
November, 2020
Available data
19
bam
19
bed narrowPeak
19
bigBed narrowPeak
19
bigWig
17
bed broadPeak
17
bigBed broadPeak
15
bed bed3+
12
fastq
Organism
20
Homo sapiens
Biosample type
15
tissue
3
primary cell
1
cell line
1
in vitro differentiated cells
Organ
epithelium
4
blood vessel
4
limb
4
liver
4
pancreas
4
vasculature
3
connective tissue
3
kidney
2
artery
2
brain
2
nerve
2
vein
1
adipose tissue
1
spleen
Project
20
AMP
Genome assembly (visualization)
19
hg19
17
GRCh38
Lab
20
AMP-T2D consortium
month_released!
June, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
20 results
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DNase-seq
tissue
body of pancreas
2
brain
2
liver
2
right lobe of liver
2
tibial artery
2
+ See 4 more…
primary cell
skeletal muscle myoblast
2
osteoblast
1
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
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