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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
Assay category
139
Transcription
42
DNA accessibility
37
DNA binding
5
3D chromatin structure
2
DNA methylation
Target of assay
17
histone
17
histone modification
12
transcription factor
11
narrow histone mark
8
control
7
recombinant protein
6
broad histone mark
2
RNA binding protein
Date released
June, 2019
13
November, 2019
12
October, 2019
4
December, 2017
4
May, 2021
3
May, 2019
1
March, 2020
Available data
37
bam
29
bed narrowPeak
29
bigWig
4
fastq
3
tagAlign
2
bigBed narrowPeak
Organism
37
Homo sapiens
Biosample type
25
cell line
7
in vitro differentiated cells
3
primary cell
2
tissue
Organ
22
epithelium
15
pancreas
13
kidney
4
embryo
2
brain
Project
35
AMP
2
T1D
Genome assembly (visualization)
29
GRCh38
29
hg19
Lab
37
AMP-T2D consortium
Audit category:
37
inconsistent ontology term
28
inconsistent control
Audit category:
1
inconsistent control read length
month_released!
June, 2019
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
cell line
EndoC_BH1
15
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
in vitro differentiated cells
Hepatic endoderm
4
cardiomyocytes
3
primary cell
kidney epithelial cell
3
tissue
brodmann area 43
1
insular gyrus
1
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