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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
DNase-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
214
DNA binding
24
Transcription
7
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
183
histone
183
histone modification
116
narrow histone mark
67
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
June, 2019
28
May, 2019
18
July, 2019
12
February, 2020
12
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
210
bam
189
bigWig
170
bed narrowPeak
114
tagAlign
94
bigBed narrowPeak
26
tsv
17
fastq
15
bed broadPeak
8
bigBed broadPeak
5
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
252
Homo sapiens
Biosample type
236
tissue
16
primary cell
Organ
888
pancreas
776
liver
649
connective tissue
483
epithelium
478
adipose tissue
358
heart
273
kidney
252
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
36
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
252
AMP
Genome assembly (visualization)
184
GRCh38
141
hg19
Lab
252
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
missing controlled_by
month_released!
June, 2019
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
small intestine
BIOSAMPLE
ASSAY
252 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
DNase-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
16
1
1
2
1
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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