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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
Hi-C
1
whole genome sequencing assay
Assay category
1592
DNA binding
1482
Transcription
381
DNA accessibility
39
DNA methylation
24
3D chromatin structure
1
DNA sequencing
Date released
9
March, 2020
4
August, 2021
4
July, 2019
4
October, 2019
2
November, 2019
1
December, 2018
1
March, 2019
Available data
17
hic
16
bedpe bed3+
1
bed bed3+
1
bedpe
1
bigWig
1
fastq
1
hdf5
1
vcf
Organism
25
Homo sapiens
Biosample type
16
tissue
primary cell
5
cell line
4
in vitro differentiated cells
Organ
6
musculature of body
6
pancreas
4
limb
4
liver
3
heart
1
blood vessel
1
epithelium
1
kidney
1
vasculature
Project
25
AMP
Genome assembly (visualization)
18
hg19
1
GRCh38
Lab
20
AMP-T2D consortium
4
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
June, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
25 results
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Hi-C
whole genome sequencing assay
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
cell line
HepG2
2
1
EndoC_BH1
1
Panc1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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