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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
138
ChIP-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
188
Transcription
138
DNA binding
6
DNA methylation
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
107
control
22
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
167
May, 2020
66
November, 2017
36
August, 2017
20
May, 2022
17
August, 2021
13
December, 2017
8
July, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
November, 2018
1
December, 2018
1
February, 2020
1
October, 2019
Available data
669
bam
611
bigWig
465
fastq
bed narrowPeak
356
bigBed narrowPeak
169
tsv
82
tagAlign
61
bed broadPeak
61
bigBed broadPeak
7
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
342
Homo sapiens
Biosample type
248
tissue
93
cell line
primary cell
1
in vitro differentiated cells
Organ
587
connective tissue
476
adipose tissue
454
pancreas
342
liver
195
heart
157
kidney
150
bone element
87
blood vessel
87
vasculature
73
brain
73
epithelium
65
artery
31
musculature of body
30
limb
26
eye
23
embryo
20
lung
16
nerve
11
spleen
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
342
AMP
Genome assembly (visualization)
181
hg19
159
GRCh38
Lab
305
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
month_released!
June, 2019
biosample_type!
primary cell
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
342 results
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total RNA-seq
ChIP-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
63
3
1
1
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
14
71
1
2
2
2
1
in vitro differentiated cells
hepatocyte
1
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