Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
16
total RNA-seq
4
small RNA-seq
3
ATAC-seq
2
DNase-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
125
DNA binding
20
Transcription
6
DNA accessibility
1
DNA methylation
Target of assay
107
histone
107
histone modification
67
broad histone mark
40
narrow histone mark
18
control
Date released
October, 2019
82
November, 2017
28
May, 2019
June, 2019
16
October, 2017
12
February, 2020
11
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
118
bam
101
bigWig
92
bed narrowPeak
91
bigBed narrowPeak
80
tagAlign
22
tsv
12
fastq
11
bed broadPeak
2
bed bed3+
2
bigBed broadPeak
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
154
Homo sapiens
Biosample type
154
tissue
primary cell
Organ
771
liver
640
connective tissue
578
pancreas
487
adipose tissue
345
heart
231
kidney
170
blood vessel
170
vasculature
158
bone element
154
brain
116
epithelium
111
artery
61
blood
61
bodily fluid
50
musculature of body
37
embryo
32
eye
25
spleen
21
limb
20
lung
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
154
AMP
Genome assembly (visualization)
100
GRCh38
50
hg19
Lab
154
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
June, 2019
October, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
154 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
DNase-seq
pCHi-C
FAIRE-seq
RRBS
tissue
layer of hippocampus
22
brain
15
1
2
1
temporal lobe
15
1
1
caudate nucleus
15
1
substantia nigra
15
1
+ See 16 more…
See all biosamples
Download