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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
54
total RNA-seq
37
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
119
Transcription
83
DNA accessibility
37
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
130
August, 2021
June, 2019
47
September, 2023
23
April, 2019
19
October, 2019
14
May, 2023
8
February, 2021
4
July, 2019
3
December, 2019
2
March, 2020
Available data
93
bed narrowPeak
64
xls
62
txt
45
bam
35
bigWig
20
bigBed narrowPeak
18
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
250
Homo sapiens
Biosample type
231
tissue
primary cell
19
cell line
Organ
777
liver
644
connective tissue
596
pancreas
488
adipose tissue
353
heart
250
kidney
240
brain
196
blood vessel
196
vasculature
158
bone element
137
artery
118
epithelium
90
limb
61
blood
61
bodily fluid
53
eye
50
musculature of body
43
nerve
37
embryo
25
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
203
AMP
47
KPMP
Genome assembly (visualization)
109
GRCh38
37
hg19
Lab
142
Katalin Susztak, Upenn
59
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
7
audit script error
month_released!
June, 2019
biosample_type!
primary cell
organ_slims!
large intestine
BIOSAMPLE
ASSAY
250 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
DNase-seq
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
64
49
27
6
1
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
cell line
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
HEK293T
2
glomerular visceral epithelial cell
1
1
+ See 1 more…
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