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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
6
WGBS
2
pCHi-C
2
total RNA-seq
1
RNA microarray
Assay category
54
DNA binding
6
DNA methylation
2
Transcription
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
10
narrow histone mark
Date released
42
August, 2017
18
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
Available data
23
fastq
21
bam
7
tagAlign
3
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
bigWig
1
bedpe bed3+
Organism
64
Homo sapiens
Biosample type
64
tissue
1
in vitro differentiated cells
Organ
213
kidney
200
heart
165
liver
125
pancreas
112
brain
90
connective tissue
88
bone element
65
adipose tissue
65
blood vessel
65
vasculature
48
artery
34
epithelium
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
hg19
421
GRCh38
Lab
65
AMP-T2D consortium
month_released!
June, 2019
biosample_type!
primary cell
assembly!
hg19
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
WGBS
pCHi-C
total RNA-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
3
1
in vitro differentiated cells
white fat cell
1
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