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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
73
ChIP-seq
6
ATAC-seq
6
WGBS
2
pCHi-C
2
small RNA-seq
1
DNase-seq
1
RNA microarray
Assay category
397
Transcription
73
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
10
July, 2019
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
439
bam
422
bigWig
397
tsv
44
fastq
12
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
5
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bedpe bed3+
1
bigBed broadPeak
Organism
485
Homo sapiens
Biosample type
485
tissue
primary cell
1
in vitro differentiated cells
Organ
776
liver
642
connective tissue
595
pancreas
486
adipose tissue
350
heart
250
kidney
228
brain
193
blood vessel
193
vasculature
158
bone element
135
artery
118
epithelium
87
limb
61
blood
61
bodily fluid
52
eye
48
musculature of body
42
nerve
37
embryo
25
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
486
AMP
Genome assembly (visualization)
423
hg19
421
GRCh38
Lab
486
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
June, 2019
February, 2020
biosample_type!
primary cell
BIOSAMPLE
ASSAY
486 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
6
12
1
1
1
omental fat pad
4
11
1
1
1
white adipose tissue
12
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in vitro differentiated cells
white fat cell
1
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