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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
total RNA-seq
202
ChIP-seq
93
single cell RNA-seq
53
ATAC-seq
14
WGBS
5
pCHi-C
3
Hi-C
3
small RNA-seq
1
DNase-seq
1
RNA microarray
1
RRBS
Assay category
561
Transcription
202
DNA binding
54
DNA accessibility
15
DNA methylation
3
3D chromatin structure
Target of assay
127
histone
127
histone modification
77
broad histone mark
50
narrow histone mark
42
control
33
transcription factor
15
RNA binding protein
Date released
452
February, 2021
93
August, 2021
57
April, 2019
57
August, 2017
40
May, 2024
37
February, 2023
30
July, 2019
June, 2019
23
October, 2018
21
May, 2019
9
October, 2019
8
March, 2020
5
February, 2020
3
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
611
bam
609
bigWig
563
tsv
170
bed narrowPeak
70
bigBed narrowPeak
44
fastq
14
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
5
bed bed3+
4
bedpe bed3+
3
hic
2
bed broadPeak
1
bigBed broadPeak
Organism
840
Homo sapiens
Biosample type
773
tissue
66
cell line
primary cell
2
in vitro differentiated cells
Organ
777
liver
644
connective tissue
596
pancreas
488
adipose tissue
353
heart
250
kidney
240
brain
196
blood vessel
196
vasculature
158
bone element
137
artery
118
epithelium
90
limb
61
blood
61
bodily fluid
53
eye
50
musculature of body
43
nerve
37
embryo
25
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
841
AMP
Genome assembly (visualization)
650
GRCh38
576
hg19
Lab
801
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
June, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
841 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
DNase-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
heart left ventricle
3
35
18
2
4
1
1
1
left cardiac atrium
40
18
coronary artery
1
5
36
subcutaneous abdominal adipose tissue
36
3
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cell line
smooth muscle cell of the coronary artery
52
6
8
in vitro differentiated cells
cardiac fibroblast
1
white fat cell
1
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