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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
total RNA-seq
139
ChIP-seq
14
ATAC-seq
7
WGBS
5
DNase-seq
4
Hi-C
2
pCHi-C
2
small RNA-seq
1
RNA microarray
Assay category
406
Transcription
139
DNA binding
19
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
81
histone
81
histone modification
54
broad histone mark
41
control
27
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
392
February, 2021
70
October, 2019
57
August, 2017
June, 2019
23
October, 2018
15
July, 2019
7
May, 2019
5
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
521
bam
481
bigWig
406
tsv
72
bed narrowPeak
61
bigBed narrowPeak
44
fastq
9
bed bed3+
8
tagAlign
6
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
577
Homo sapiens
Biosample type
577
tissue
primary cell
1
in vitro differentiated cells
Organ
777
liver
644
connective tissue
596
pancreas
488
adipose tissue
353
heart
250
kidney
240
brain
196
blood vessel
196
vasculature
158
bone element
137
artery
118
epithelium
90
limb
61
blood
61
bodily fluid
53
eye
50
musculature of body
43
nerve
37
embryo
25
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
578
AMP
Genome assembly (visualization)
487
hg19
485
GRCh38
Lab
578
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
June, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
578 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
tibial nerve
5
35
1
2
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
1
2
subcutaneous adipose tissue
7
12
1
1
1
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in vitro differentiated cells
white fat cell
1
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