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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
68
ChIP-seq
6
ATAC-seq
6
WGBS
2
pCHi-C
2
small RNA-seq
1
DNase-seq
1
RNA microarray
Assay category
399
Transcription
68
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
RNA binding protein
Date released
386
February, 2021
57
August, 2017
18
October, 2018
10
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
434
bam
417
bigWig
399
tsv
39
fastq
8
tagAlign
7
bed narrowPeak
5
bed bed3+
4
bigBed narrowPeak
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bedpe bed3+
1
bigBed broadPeak
Organism
482
Homo sapiens
Biosample type
482
tissue
primary cell
1
in vitro differentiated cells
Organ
719
liver
635
connective tissue
587
pancreas
483
adipose tissue
343
heart
249
kidney
240
brain
193
blood vessel
193
vasculature
158
bone element
136
artery
115
epithelium
90
limb
53
eye
51
blood
51
bodily fluid
50
musculature of body
43
nerve
37
embryo
25
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
483
AMP
Genome assembly (visualization)
418
hg19
416
GRCh38
Lab
483
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
June, 2019
biosample_type!
primary cell
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
483 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
1
omental fat pad
5
8
1
1
1
white adipose tissue
12
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in vitro differentiated cells
white fat cell
1
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