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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
4
total RNA-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
83
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
64
transcription factor
23
recombinant protein
21
RNA binding protein
12
control
7
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
90
bam
77
bigWig
71
bed narrowPeak
64
bigBed narrowPeak
61
fastq
4
tsv
2
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
Organism
91
Homo sapiens
Biosample type
268
tissue
91
cell line
35
primary cell
8
in vitro differentiated cells
Organ
46
liver
15
blood
15
bodily fluid
15
kidney
15
pancreas
2
epithelium
Project
91
AMP
Genome assembly (visualization)
77
GRCh38
74
hg19
Lab
91
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
1
inconsistent assembly
month_released!
June, 2019
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
45
1
GM12878
15
Panc1
13
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
1
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