Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
6
MeRIP-seq
4
total RNA-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
83
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
64
transcription factor
23
recombinant protein
21
RNA binding protein
15
control
7
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
nucleotide modification
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
90
bam
77
bigWig
71
bed narrowPeak
64
bigBed narrowPeak
61
fastq
4
tsv
2
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
Organism
97
Homo sapiens
Biosample type
272
tissue
97
cell line
41
primary cell
8
in vitro differentiated cells
Organ
46
liver
21
pancreas
15
blood
15
bodily fluid
15
kidney
8
epithelium
Project
97
AMP
Genome assembly (visualization)
77
GRCh38
74
hg19
Lab
91
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
19
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
1
inconsistent assembly
month_released!
June, 2019
BIOSAMPLE
ASSAY
97 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
45
1
GM12878
15
Panc1
13
1
1
EndoC_BH1
6
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
1
See all biosamples
Download