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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
907
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
pCHi-C
16
Hi-C
16
small RNA-seq
15
DNase-seq
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
Assay category
1227
Transcription
907
DNA binding
307
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
nucleotide modification
Date released
545
February, 2021
284
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
20
March, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
3
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
Available data
1744
bam
1609
bigWig
1056
tsv
821
bed narrowPeak
398
bigBed narrowPeak
377
fastq
238
tagAlign
157
txt
64
xls
50
bed broadPeak
42
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
13
bigBed broadPeak
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2578
Homo sapiens
Biosample type
2587
tissue
1016
primary cell
653
cell line
389
in vitro differentiated cells
6
stem cell
Organ
545
connective tissue
498
pancreas
486
adipose tissue
360
liver
283
heart
238
brain
231
kidney
158
bone element
129
blood vessel
129
vasculature
90
limb
71
artery
49
eye
49
musculature of body
43
nerve
24
spleen
19
lung
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2491
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1696
GRCh38
1608
hg19
Lab
2238
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
June, 2019
assay_title!
pCHi-C
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
2587 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
small RNA-seq
DNase-seq
RRBS
FAIRE-seq
snDrop-seq
MeRIP-seq
tissue
islet of Langerhans
292
71
68
6
7
3
1
1
1
2
adipose tissue
382
2
3
3
liver
167
145
20
1
3
1
1
2
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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