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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
13
DNase-seq
1
snATAC-seq
Assay category
28
DNA binding
14
DNA accessibility
Target of assay
13
transcription factor
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
3
control
2
RNA binding protein
Date released
June, 2019
26
August, 2017
9
November, 2018
4
October, 2019
2
September, 2017
1
May, 2022
Available data
1744
bam
1569
bigWig
1076
tsv
781
bed narrowPeak
398
bigBed narrowPeak
377
fastq
238
tagAlign
157
txt
64
xls
50
bed broadPeak
42
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
13
bigBed broadPeak
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
42
Homo sapiens
Biosample type
42
tissue
25
in vitro differentiated cells
13
primary cell
3
cell line
3
stem cell
Organ
23
pancreas
6
liver
5
adipose tissue
5
connective tissue
4
limb
2
artery
2
blood vessel
2
brain
2
nerve
2
vasculature
1
musculature of body
1
spleen
Project
42
AMP
Genome assembly (visualization)
42
hg19
41
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
14
missing controlled_by
month_released!
June, 2019
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
DNase-seq
snATAC-seq
tissue
islet of Langerhans
21
liver
3
2
white adipose tissue
4
body of pancreas
2
brain
2
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