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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
13
DNase-seq
2
ATAC-seq
Assay category
35
DNA binding
15
DNA accessibility
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
June, 2019
26
August, 2017
9
November, 2018
6
November, 2017
4
October, 2017
4
October, 2019
1
March, 2019
Available data
1744
bam
1569
bigWig
1076
tsv
781
bed narrowPeak
398
bigBed narrowPeak
377
fastq
238
tagAlign
157
txt
64
xls
50
bed broadPeak
42
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
13
bigBed broadPeak
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
44
Homo sapiens
Biosample type
59
cell line
50
tissue
25
primary cell
1
in vitro differentiated cells
Organ
16
pancreas
13
musculature of body
11
brain
4
limb
3
liver
2
adipose tissue
2
artery
2
blood vessel
2
connective tissue
2
nerve
2
vasculature
1
spleen
Project
50
AMP
Genome assembly (visualization)
49
hg19
28
GRCh38
Lab
48
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
June, 2019
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
DNase-seq
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
2
body of pancreas
2
+ See 11 more…
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