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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
910
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
29
pCHi-C
28
snATAC-seq
16
Hi-C
16
small RNA-seq
15
DNase-seq
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
GRO-seq
Assay category
1229
Transcription
910
DNA binding
307
DNA accessibility
16
3D chromatin structure
13
DNA methylation
Target of assay
630
histone modification
629
histone
325
narrow histone mark
304
broad histone mark
188
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
279
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
63
July, 2019
51
December, 2017
47
September, 2023
44
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2018
2
March, 2023
1
August, 2022
Available data
1747
bam
1612
bigWig
1080
tsv
823
bed narrowPeak
398
bigBed narrowPeak
381
fastq
238
tagAlign
157
txt
64
xls
50
bed broadPeak
45
bed bed3+
bed bedMethyl
25
bigBed bedMethyl
13
bigBed broadPeak
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2588
Homo sapiens
Biosample type
2589
tissue
1023
primary cell
661
cell line
394
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
495
pancreas
485
adipose tissue
360
liver
279
heart
239
brain
230
kidney
158
bone element
129
blood vessel
129
vasculature
89
limb
71
artery
53
eye
47
musculature of body
43
nerve
23
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2500
AMP
47
KPMP
31
T1D
19
LungMap
2
community
Genome assembly (visualization)
1683
GRCh38
1602
hg19
1
hg18
Lab
2245
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
month_released!
June, 2019
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
2599 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
DNase-seq
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
CRISPR RNA-seq
CRISPRi RNA-seq
GRO-seq
tissue
islet of Langerhans
292
71
68
6
4
7
3
1
1
4
adipose tissue
382
2
3
1
1
liver
167
145
20
1
1
1
1
2
3
kidney
49
27
75
64
6
1
1
bone element
84
+ See 158 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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