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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
15
DNase-seq
2
ATAC-seq
Assay category
93
DNA binding
17
DNA accessibility
Target of assay
49
histone
49
histone modification
44
transcription factor
28
broad histone mark
21
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
June, 2019
64
November, 2017
27
August, 2017
9
November, 2018
5
October, 2019
4
October, 2017
1
March, 2019
Available data
2620
bam
2393
bigWig
1359
bed narrowPeak
1330
tsv
949
fastq
770
bigBed narrowPeak
298
tagAlign
161
txt
110
bed broadPeak
73
bed bed3+
73
bigBed broadPeak
64
xls
26
bed bedMethyl
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
104
Homo sapiens
Biosample type
59
cell line
50
tissue
primary cell
1
in vitro differentiated cells
Organ
61
liver
17
pancreas
13
musculature of body
11
brain
4
limb
3
connective tissue
2
adipose tissue
2
artery
2
blood vessel
2
nerve
2
vasculature
1
spleen
Project
110
AMP
Genome assembly (visualization)
109
hg19
74
GRCh38
Lab
108
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
month_released!
June, 2019
files.file_type!
bigBed bedMethyl
biosample_type!
primary cell
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
58
Panc1
1
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
2
body of pancreas
2
+ See 11 more…
in vitro differentiated cells
adipocyte
1
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