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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
93
single cell RNA-seq
68
total RNA-seq
47
ATAC-seq
3
Hi-C
3
pCHi-C
2
WGBS
1
small RNA-seq
Assay category
162
Transcription
129
DNA binding
47
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
June, 2019
21
May, 2019
13
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
Available data
187
bigWig
172
bam
164
tsv
158
bed narrowPeak
61
bigBed narrowPeak
7
bed bedMethyl
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
346
Homo sapiens
Biosample type
279
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
775
liver
642
connective tissue
590
pancreas
486
adipose tissue
346
heart
249
kidney
239
brain
195
blood vessel
195
vasculature
158
bone element
137
artery
118
epithelium
89
limb
61
blood
61
bodily fluid
53
eye
47
musculature of body
43
nerve
37
embryo
23
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
346
AMP
Genome assembly (visualization)
223
GRCh38
152
hg19
Lab
306
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
month_released!
June, 2019
files.file_type!
bigBed bedMethyl
biosample_type!
primary cell
BIOSAMPLE
ASSAY
346 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
WGBS
small RNA-seq
tissue
heart left ventricle
35
18
3
2
1
1
2
left cardiac atrium
40
18
coronary artery
5
1
36
heart right ventricle
13
17
1
1
1
right cardiac atrium
6
18
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
cardiac fibroblast
1
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