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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
23
ATAC-seq
20
total RNA-seq
4
DNase-seq
4
Hi-C
4
WGBS
2
STARR-seq
1
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
27
DNA accessibility
21
Transcription
4
3D chromatin structure
4
DNA methylation
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
53
August, 2017
52
November, 2018
50
May, 2020
40
May, 2022
26
August, 2021
6
October, 2019
3
February, 2021
2
July, 2019
June, 2019
1
December, 2018
1
March, 2020
Available data
679
bam
620
bigWig
465
fastq
439
bed narrowPeak
356
bigBed narrowPeak
tsv
86
tagAlign
61
bed broadPeak
61
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
612
Homo sapiens
Biosample type
385
cell line
206
tissue
15
in vitro differentiated cells
6
primary cell
Organ
612
liver
519
pancreas
342
epithelium
245
kidney
228
brain
185
connective tissue
182
heart
159
vasculature
156
blood vessel
101
bone element
87
adipose tissue
82
limb
81
artery
69
blood
69
bodily fluid
48
eye
40
musculature of body
38
nerve
23
embryo
22
spleen
22
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
thymus
Project
612
AMP
Genome assembly (visualization)
459
hg19
366
GRCh38
Lab
550
AMP-T2D consortium
40
Karen Mohlke, UNC
22
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
June, 2019
files.file_type!
bigBed bedMethyl
tsv
BIOSAMPLE
ASSAY
612 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
1
2
2
1
1
tissue
liver
145
20
20
2
1
3
1
right lobe of liver
10
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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