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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
8
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
1
whole genome sequencing assay
Assay category
67
Transcription
4
DNA accessibility
1
DNA sequencing
Date released
84
February, 2021
58
August, 2021
7
February, 2023
7
May, 2022
1
October, 2022
Available data
3174
bam
2959
bigWig
1607
bed narrowPeak
1600
tsv
1358
fastq
832
bigBed narrowPeak
398
tagAlign
161
txt
153
zippedFastqFolder
135
bed broadPeak
98
bigBed broadPeak
86
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
156
Homo sapiens
Biosample type
152
tissue
3
in vitro differentiated cells
2
cell line
Organ
88
bone element
57
kidney
6
pancreas
4
skeleton
1
liver
1
musculature of body
Project
157
AMP
Genome assembly (visualization)
4
hg19
Lab
90
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
Audit category:
85
inconsistent ontology term
1
audit script error
month_released!
June, 2019
files.file_type!
csv
BIOSAMPLE
ASSAY
157 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
whole genome sequencing assay
tissue
bone element
84
kidney
49
8
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
MIN6
1
See all biosamples
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