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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
239
ChIP-seq
200
ATAC-seq
185
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
7
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
434
Transcription
264
DNA accessibility
239
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
215
histone
215
histone modification
114
broad histone mark
101
narrow histone mark
24
control
3
RNA binding protein
3
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
72
September, 2018
59
August, 2017
59
September, 2020
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
557
bigWig
545
bam
400
fastq
270
tsv
242
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
56
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
csv
1
bed bed3
1
tar
Organism
1022
Homo sapiens
Biosample type
2526
tissue
1022
primary cell
394
in vitro differentiated cells
347
cell line
10
stem cell
Organ
380
epithelium
346
pancreas
27
vasculature
26
blood vessel
23
kidney
22
connective tissue
22
vein
12
liver
8
blood
8
bodily fluid
7
brain
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
493
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
579
hg19
483
GRCh38
Lab
458
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
29
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
June, 2019
November, 2017
files.file_type!
csv
BIOSAMPLE
ASSAY
1022 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
23
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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