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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
8
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
67
Transcription
4
DNA accessibility
Date released
84
February, 2021
57
August, 2021
7
February, 2023
7
May, 2022
1
October, 2022
Available data
2924
bam
2752
bigWig
1584
tsv
1418
bed narrowPeak
1358
fastq
762
bigBed narrowPeak
349
tagAlign
161
txt
153
zippedFastqFolder
126
bed broadPeak
89
bigBed broadPeak
78
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
155
Homo sapiens
Biosample type
152
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
57
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
156
AMP
Genome assembly (visualization)
4
hg19
Lab
90
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
1
audit script error
month_released!
June, 2019
October, 2019
files.file_type!
csv
BIOSAMPLE
ASSAY
156 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
8
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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