Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
744
ChIP-seq
17
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
744
DNA binding
26
DNA accessibility
Target of assay
395
transcription factor
344
histone
344
histone modification
221
broad histone mark
123
narrow histone mark
83
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
306
November, 2017
June, 2019
93
May, 2019
73
November, 2018
64
April, 2019
57
October, 2019
50
December, 2017
45
October, 2018
30
December, 2018
23
August, 2017
21
January, 2019
6
October, 2017
2
July, 2019
Available data
2620
bam
2353
bigWig
1330
tsv
1319
bed narrowPeak
949
fastq
770
bigBed narrowPeak
298
tagAlign
161
txt
110
bed broadPeak
73
bed bed3+
73
bigBed broadPeak
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
764
Homo sapiens
Biosample type
398
tissue
355
cell line
primary cell
17
in vitro differentiated cells
Organ
356
liver
91
brain
65
pancreas
61
heart
59
blood vessel
59
vasculature
54
blood
54
bodily fluid
52
limb
26
nerve
23
artery
20
kidney
15
epithelium
13
spleen
12
connective tissue
9
adipose tissue
6
musculature of body
Project
770
AMP
Genome assembly (visualization)
730
GRCh38
714
hg19
Lab
770
AMP-T2D consortium
Audit category:
28
inconsistent control
Audit category:
15
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
June, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
770 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
body of pancreas
26
2
heart left ventricle
28
tibial nerve
24
2
tibial artery
18
2
+ See 29 more…
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
Download