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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
ChIP-seq
2
DNase-seq
1
FAIRE-seq
Assay category
170
DNA binding
3
DNA accessibility
Target of assay
167
histone
167
histone modification
106
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
75
October, 2019
64
November, 2017
June, 2019
25
May, 2019
6
October, 2017
2
November, 2018
1
July, 2019
Available data
213
bam
192
bigWig
173
bed narrowPeak
118
tagAlign
97
bigBed narrowPeak
26
tsv
21
fastq
17
bed broadPeak
8
bigBed broadPeak
5
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
0
vcf
Organism
173
Homo sapiens
Biosample type
167
tissue
6
primary cell
Organ
440
liver
210
pancreas
173
brain
158
heart
133
epithelium
126
vasculature
124
blood vessel
103
kidney
72
artery
60
connective tissue
60
limb
54
blood
54
bodily fluid
27
eye
27
nerve
19
musculature of body
14
embryo
14
spleen
13
vein
12
adipose tissue
8
bone element
8
skeleton
1
pituitary gland
Project
173
AMP
Genome assembly (visualization)
171
GRCh38
121
hg19
Lab
173
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
June, 2019
BIOSAMPLE
ASSAY
173 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
layer of hippocampus
17
angular gyrus
14
brain
11
2
temporal lobe
13
caudate nucleus
12
+ See 62 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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