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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
413
ChIP-seq
23
ATAC-seq
3
DNase-seq
1
whole genome sequencing assay
Assay category
413
DNA binding
26
DNA accessibility
1
DNA sequencing
Target of assay
329
transcription factor
81
histone modification
81
recombinant protein
80
histone
56
RNA binding protein
51
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
51
November, 2018
50
December, 2017
27
May, 2020
20
May, 2022
18
August, 2017
18
August, 2021
6
October, 2019
June, 2019
1
February, 2021
Available data
679
bam
620
bigWig
465
fastq
439
bed narrowPeak
356
bigBed narrowPeak
174
tsv
86
tagAlign
61
bed broadPeak
61
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
440
Homo sapiens
Biosample type
309
cell line
113
tissue
14
in vitro differentiated cells
4
primary cell
Organ
440
liver
210
pancreas
173
brain
158
heart
133
epithelium
126
vasculature
124
blood vessel
103
kidney
72
artery
60
connective tissue
60
limb
54
blood
54
bodily fluid
27
eye
27
nerve
19
musculature of body
14
embryo
14
spleen
13
vein
12
adipose tissue
8
bone element
8
skeleton
1
pituitary gland
Project
440
AMP
Genome assembly (visualization)
435
hg19
365
GRCh38
Lab
405
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
month_released!
June, 2019
BIOSAMPLE
ASSAY
440 results
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ChIP-seq
ATAC-seq
DNase-seq
whole genome sequencing assay
cell line
HepG2
307
1
1
tissue
liver
82
20
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
Liver fetal (hepatocyte)
1
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