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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
DNase-seq
4
Hi-C
Assay category
66
DNA binding
12
DNA accessibility
7
Transcription
4
3D chromatin structure
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
June, 2019
7
May, 2019
6
February, 2021
4
July, 2019
3
February, 2020
Available data
81
bam
60
bed narrowPeak
58
bigWig
52
bigBed narrowPeak
7
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
89
Homo sapiens
Biosample type
89
tissue
Organ
887
pancreas
782
liver
659
connective tissue
484
adipose tissue
451
epithelium
348
heart
269
kidney
254
brain
226
vasculature
223
blood vessel
159
bone element
139
artery
89
limb
69
blood
69
bodily fluid
53
eye
47
musculature of body
43
nerve
37
embryo
23
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
64
hg19
63
GRCh38
Lab
89
AMP-T2D consortium
month_released!
June, 2019
lab.title!
Mark McCarthy, Oxford
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
tissue
tibial nerve
35
1
5
2
tibial artery
23
1
1
2
muscle of leg
7
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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