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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ATAC-seq
73
total RNA-seq
55
ChIP-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
91
DNA accessibility
73
Transcription
55
DNA binding
51
DNA methylation
1
3D chromatin structure
Target of assay
51
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
86
May, 2022
56
February, 2023
29
August, 2017
19
September, 2020
18
May, 2021
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
7
August, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2018
4
September, 2017
3
March, 2020
June, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
March, 2019
1
May, 2019
Available data
107
fastq
80
zippedFastqFolder
51
bam
14
bigWig
9
tsv
6
txt
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
1
bedpe bed3+
Organism
283
Homo sapiens
Biosample type
161
primary cell
89
tissue
34
cell line
1
in vitro differentiated cells
Organ
285
pancreas
217
kidney
205
epithelium
200
heart
166
liver
112
brain
91
connective tissue
89
bone element
70
blood vessel
70
vasculature
65
adipose tissue
48
artery
26
eye
26
limb
21
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
HPAP
108
AMP
28
T1D
Genome assembly (visualization)
hg19
630
GRCh38
Lab
149
Klaus Kaestner, Upenn
90
AMP-T2D consortium
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
Mark McCarthy, Oxford
Audit category:
26
inconsistent ontology term
1
audit script error
month_released!
June, 2019
lab.title!
Mark McCarthy, Oxford
assembly!
hg19
BIOSAMPLE
ASSAY
285 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
29
42
6
31
pancreatic beta cell
16
11
6
16
pancreatic acinar cell
4
tissue
islet of Langerhans
15
18
19
7
4
1
body of pancreas
1
9
2
pancreas
1
3
2
4
1
endocrine pancreas
2
cell line
EndoC_BH1
16
2
6
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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