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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
2
WGBS
1
pCHi-C
Assay category
35
DNA accessibility
23
DNA binding
9
Transcription
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
October, 2019
6
August, 2021
3
February, 2020
2
February, 2021
2
July, 2019
June, 2019
1
March, 2020
Available data
35
bed narrowPeak
25
bam
10
tsv
2
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
70
Homo sapiens
Biosample type
63
tissue
5
primary cell
2
cell line
Organ
286
pancreas
217
kidney
205
epithelium
200
heart
166
liver
112
brain
91
connective tissue
89
bone element
70
blood vessel
70
vasculature
65
adipose tissue
48
artery
26
eye
26
limb
21
musculature of body
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
70
AMP
Genome assembly (visualization)
182
GRCh38
hg19
Lab
70
AMP-T2D consortium
month_released!
June, 2019
lab.title!
Xin Sun, UCSD
assembly!
hg19
BIOSAMPLE
ASSAY
70 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
2
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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primary cell
endothelial cell of umbilical vein
5
cell line
smooth muscle cell of the coronary artery
2
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