Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
131
ChIP-seq
102
single cell RNA-seq
57
total RNA-seq
10
RRBS
7
DNase-seq
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
161
Transcription
159
DNA accessibility
131
DNA binding
11
DNA methylation
6
3D chromatin structure
Target of assay
104
histone
104
histone modification
54
narrow histone mark
50
broad histone mark
24
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
June, 2019
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
20
May, 2021
12
February, 2023
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
374
bam
341
bigWig
240
fastq
168
tsv
134
bed narrowPeak
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
16
tagAlign
11
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
469
Homo sapiens
Biosample type
2262
tissue
615
cell line
469
primary cell
340
in vitro differentiated cells
8
stem cell
Organ
234
epithelium
194
pancreas
33
vasculature
29
blood vessel
23
kidney
22
vein
21
connective tissue
16
brain
12
liver
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
469
AMP
Genome assembly (visualization)
370
hg19
298
GRCh38
Lab
469
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
24
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
June, 2019
BIOSAMPLE
ASSAY
469 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RRBS
DNase-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
7
13
12
10
pancreatic alpha cell
6
13
12
10
pancreatic ductal cell
4
13
10
4
pancreatic acinar cell
5
8
12
4
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
+ See 77 more…
See all biosamples
Download