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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
15
DNase-seq
Assay category
73
DNA binding
15
DNA accessibility
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
June, 2019
60
November, 2017
15
August, 2017
9
November, 2018
3
October, 2019
1
November, 2020
Available data
2996
bam
2811
bigWig
1532
tsv
1481
bed narrowPeak
1352
fastq
756
bigBed narrowPeak
392
tagAlign
161
txt
153
zippedFastqFolder
125
bed broadPeak
88
bigBed broadPeak
80
bed bed3+
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
88
Homo sapiens
Biosample type
59
cell line
17
primary cell
11
tissue
1
in vitro differentiated cells
Organ
61
liver
vasculature
8
blood vessel
8
brain
8
epithelium
4
limb
4
vein
3
connective tissue
3
pancreas
2
artery
2
nerve
1
adipose tissue
1
spleen
Project
88
AMP
Genome assembly (visualization)
88
hg19
72
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
month_released!
June, 2019
month_released!!
June, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
osteoblast
1
tissue
body of pancreas
2
brain
2
liver
2
tibial nerve
2
omental fat pad
1
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in vitro differentiated cells
adipocyte
1
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