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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
ATAC-seq
187
single cell RNA-seq
127
ChIP-seq
56
snATAC-seq
47
WGBS
10
Hi-C
10
RRBS
7
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
381
Transcription
251
DNA accessibility
127
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
100
histone
100
histone modification
52
narrow histone mark
48
broad histone mark
24
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
409
fastq
405
bam
395
bigWig
218
tsv
153
zippedFastqFolder
121
bed narrowPeak
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
16
tagAlign
11
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
827
Homo sapiens
Biosample type
2534
tissue
827
primary cell
641
cell line
262
in vitro differentiated cells
10
stem cell
Organ
386
epithelium
346
pancreas
33
vasculature
29
blood vessel
23
kidney
22
vein
21
connective tissue
16
brain
12
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
449
AMP
324
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
404
hg19
340
GRCh38
Lab
449
AMP-T2D consortium
324
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
28
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
June, 2019
May, 2021
BIOSAMPLE
ASSAY
827 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
Hi-C
RRBS
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
52
35
12
13
31
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
13
16
1
exocrine cell
39
pancreatic acinar cell
4
9
12
8
1
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