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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
54
total RNA-seq
28
ChIP-seq
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
119
Transcription
76
DNA accessibility
28
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
5
control
2
RNA binding protein
2
transcription factor
Date released
124
August, 2021
June, 2019
47
September, 2023
October, 2019
23
April, 2019
14
May, 2023
11
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
2
March, 2020
Available data
87
bed narrowPeak
64
xls
62
txt
35
bam
29
bigWig
23
bigBed narrowPeak
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
237
Homo sapiens
Biosample type
221
tissue
12
primary cell
4
cell line
Organ
913
pancreas
782
liver
662
connective tissue
489
adipose tissue
469
epithelium
350
heart
237
kidney
182
vasculature
178
blood vessel
170
brain
159
bone element
113
artery
61
blood
61
bodily fluid
52
musculature of body
37
embryo
33
eye
25
spleen
21
limb
16
skeleton
10
lung
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
190
AMP
47
KPMP
Genome assembly (visualization)
103
GRCh38
34
hg19
Lab
136
Katalin Susztak, Upenn
52
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
7
audit script error
6
inconsistent ontology term
month_released!
June, 2019
October, 2019
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
237 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
75
64
49
23
1
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
primary cell
kidney epithelial cell
1
5
1
epithelial cell of proximal tubule
1
1
renal cortical epithelial cell
1
1
glomerular endothelial cell
1
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
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