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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ATAC-seq
8
total RNA-seq
7
ChIP-seq
4
Hi-C
1
RRBS
1
WGBS
Assay category
33
DNA accessibility
8
Transcription
7
DNA binding
4
3D chromatin structure
2
DNA methylation
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
October, 2019
June, 2019
31
February, 2023
7
May, 2019
6
February, 2021
6
July, 2019
4
February, 2020
Available data
39
bed narrowPeak
14
bam
8
tsv
7
bigWig
6
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
54
Homo sapiens
Biosample type
53
tissue
1
primary cell
Organ
924
pancreas
782
liver
662
connective tissue
489
adipose tissue
469
epithelium
350
heart
243
kidney
182
vasculature
178
blood vessel
170
brain
159
bone element
113
artery
69
blood
69
bodily fluid
53
musculature of body
37
embryo
33
eye
25
spleen
21
limb
20
lung
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
54
AMP
Genome assembly (visualization)
40
hg19
12
GRCh38
Lab
54
AMP-T2D consortium
month_released!
June, 2019
October, 2019
BIOSAMPLE
ASSAY
54 results
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ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
RRBS
WGBS
tissue
retina
15
3
pigmented layer of retina
12
2
muscle of leg
7
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
+ See 7 more…
primary cell
retinal pigment epithelial cell
1
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