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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
84
RNA microarray
42
ChIP-seq
27
snATAC-seq
22
ATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
1
Hi-C
Assay category
49
DNA accessibility
42
DNA binding
18
Transcription
6
DNA methylation
1
3D chromatin structure
Target of assay
33
transcription factor
7
control
2
RNA binding protein
2
chromatin remodeller
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
89
txt
80
fastq
61
bam
53
bed narrowPeak
36
bigWig
30
bigBed narrowPeak
14
tsv
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
205
Homo sapiens
Biosample type
108
tissue
47
primary cell
46
cell line
4
in vitro differentiated cells
Organ
92
bone element
27
blood
27
bodily fluid
14
artery
14
blood vessel
14
heart
14
vasculature
8
kidney
8
skeleton
7
spleen
6
connective tissue
6
epithelium
6
limb
6
pancreas
4
liver
Project
160
AMP
45
HPAP
Genome assembly (visualization)
59
hg19
53
GRCh38
Lab
160
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
1
inconsistent control
1
inconsistent replicate
month_released!
June, 2019
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
205 results
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Clear Filters
RNA microarray
ChIP-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
Hi-C
tissue
bone element
84
spleen
7
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
+ See 10 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
cell line
GM12878
27
smooth muscle cell of the coronary artery
6
8
HepG2
1
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
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