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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
244
ChIP-seq
242
total RNA-seq
199
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
9
Hi-C
8
RRBS
7
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
431
Transcription
263
DNA accessibility
244
DNA binding
56
DNA methylation
9
3D chromatin structure
Target of assay
215
histone
215
histone modification
113
broad histone mark
102
narrow histone mark
26
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
28
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
557
bigWig
544
bam
409
fastq
265
tsv
244
bed narrowPeak
153
zippedFastqFolder
96
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
9
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
1020
Homo sapiens
Biosample type
2200
tissue
1020
primary cell
379
in vitro differentiated cells
261
cell line
10
stem cell
Organ
386
epithelium
346
pancreas
33
vasculature
29
blood vessel
23
kidney
22
connective tissue
22
vein
16
brain
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
eye
1
pericardium
Project
491
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
576
hg19
480
GRCh38
Lab
456
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
28
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
June, 2019
organ_slims!
eye
liver
BIOSAMPLE
ASSAY
1020 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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