Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1791
ChIP-seq
1473
total RNA-seq
456
ATAC-seq
290
single cell RNA-seq
85
RNA microarray
75
WGBS
68
snATAC-seq
55
pCHi-C
33
Hi-C
22
DNase-seq
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
68
DNA accessibility
Date released
27
February, 2021
22
May, 2022
16
January, 2021
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
68
Homo sapiens
Biosample type
56
primary cell
12
tissue
Organ
11
pancreas
8
blood
8
bodily fluid
kidney
1
musculature of body
Project
48
HPAP
18
T1D
2
AMP
Genome assembly (visualization)
1
hg19
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
Xin Sun, UCSD
2
AMP-T2D consortium
Audit category:
29
audit script error
month_released!
June, 2019
organ_slims!
kidney
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
68 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
7
pancreas
4
skeletal muscle tissue
1
Download