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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
44
ATAC-seq
34
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
46
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
5
May, 2019
July, 2019
2
August, 2021
2
February, 2020
June, 2019
Available data
97
bam
80
bigWig
71
bed narrowPeak
56
tsv
23
bigBed narrowPeak
6
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
136
Homo sapiens
Biosample type
70
tissue
66
cell line
Organ
936
pancreas
779
liver
648
connective tissue
491
epithelium
478
adipose tissue
293
heart
262
kidney
238
brain
217
vasculature
214
blood vessel
159
bone element
136
artery
85
limb
69
blood
69
bodily fluid
53
eye
43
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
136
AMP
Genome assembly (visualization)
123
GRCh38
88
hg19
Lab
136
AMP-T2D consortium
month_released!
June, 2019
July, 2019
BIOSAMPLE
ASSAY
136 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
35
5
tibial artery
1
1
23
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
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