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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
28
ChIP-seq
8
snATAC-seq
4
total RNA-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
47
DNA accessibility
28
DNA binding
6
Transcription
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
35
February, 2023
26
October, 2019
8
January, 2021
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
June, 2019
Available data
60
bed narrowPeak
34
bam
27
bigWig
23
bigBed narrowPeak
6
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
81
Homo sapiens
Biosample type
cell line
71
tissue
10
primary cell
Organ
850
pancreas
666
connective tissue
490
adipose tissue
425
epithelium
388
liver
292
heart
256
brain
254
kidney
163
vasculature
159
blood vessel
159
bone element
90
limb
73
artery
54
eye
53
musculature of body
43
nerve
29
embryo
25
spleen
22
vein
20
lung
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
73
AMP
8
T1D
Genome assembly (visualization)
62
GRCh38
27
hg19
Lab
73
AMP-T2D consortium
8
Kyle Gaulton, UCSD
month_released!
June, 2019
biosample_type!
cell line
BIOSAMPLE
ASSAY
81 results
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ATAC-seq
ChIP-seq
snATAC-seq
total RNA-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
36
5
1
tibial artery
1
23
1
2
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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