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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
453
total RNA-seq
19
ChIP-seq
6
ATAC-seq
2
small RNA-seq
1
DNase-seq
Assay category
455
Transcription
19
DNA binding
7
DNA accessibility
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
444
February, 2021
15
August, 2017
10
July, 2019
5
October, 2018
1
February, 2023
1
January, 2018
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
478
bigWig
476
bam
454
tsv
21
fastq
12
bed narrowPeak
9
bigBed narrowPeak
5
bed bed3+
2
bed broadPeak
1
bigBed broadPeak
1
tagAlign
Organism
481
Homo sapiens
Biosample type
481
tissue
73
in vitro differentiated cells
21
primary cell
Organ
481
connective tissue
423
adipose tissue
411
pancreas
268
liver
128
brain
88
heart
70
bone element
67
blood vessel
67
vasculature
64
limb
31
nerve
29
musculature of body
27
eye
25
artery
25
kidney
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
481
AMP
Genome assembly (visualization)
481
hg19
479
GRCh38
Lab
481
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
June, 2019
BIOSAMPLE
ASSAY
481 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
tissue
adipose tissue
382
1
3
bone tissue
58
white adipose tissue
12
omental fat pad
4
3
1
1
1
subcutaneous adipose tissue
6
2
1
1
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