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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
4
ATAC-seq
2
Capture-C
2
DNase-seq
2
WGBS
1
Hi-C
1
RRBS
1
pCHi-C
Assay category
11
DNA binding
6
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
10
transcription factor
1
control
Date released
13
August, 2017
June, 2019
4
February, 2023
2
August, 2021
2
July, 2019
1
February, 2021
1
November, 2018
1
November, 2020
Available data
575
bam
555
bigWig
478
tsv
101
fastq
60
bed narrowPeak
22
tagAlign
21
bed bed3+
13
bigBed narrowPeak
6
bed bed3
4
bed bedgraph
4
bed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
3
bigBed broadPeak
1
bedpe bed3+
1
hdf5
Organism
24
Homo sapiens
Biosample type
13
in vitro differentiated cells
7
tissue
4
primary cell
Organ
31
pancreas
24
connective tissue
14
liver
13
epithelium
8
heart
8
vasculature
7
adipose tissue
7
blood vessel
7
brain
5
limb
5
musculature of body
4
kidney
3
embryo
3
spleen
2
artery
2
nerve
2
vein
1
eye
1
pericardium
Project
24
AMP
Genome assembly (visualization)
22
hg19
15
GRCh38
Lab
22
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
June, 2019
BIOSAMPLE
ASSAY
24 results
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Clear Filters
ChIP-seq
ATAC-seq
Capture-C
DNase-seq
WGBS
Hi-C
RRBS
pCHi-C
in vitro differentiated cells
adipocyte
7
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
tissue
white adipose tissue
4
adipose tissue
2
omental fat pad
1
primary cell
osteoblast
1
1
brain pericyte
1
cardiac fibroblast
1
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